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@PennLINC

Lifespan Informatics and Neuroimaging Center

The Lifespan Informatics and Neuroimaging Center at the University of Pennylvannia
README.md

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  1. qsiprep qsiprep Public

    Preprocessing of diffusion MRI

    Python 194 63

  2. qsirecon qsirecon Public

    Reconstruction of preprocessed q-space images (dMRI)

    Python 25 17

  3. aslprep aslprep Public

    Preprocessing of arterial spin labeling (ASL) data

    Python 64 22

  4. xcp_d xcp_d Public

    Post-processing of fMRIPrep, NiBabies, and HCP outputs

    Python 119 40

  5. CuBIDS CuBIDS Public

    Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.

    Python 30 13

  6. babs babs Public

    BIDS App Bootstrap (BABS)

    Python 13 8

Repositories

Showing 10 of 242 repositories
  • luo_sex_diff Public
    PennLINC/luo_sex_diff's past year of commit activity
    HTML 0 0 0 0 Updated Oct 16, 2026
  • aslprep Public

    Preprocessing of arterial spin labeling (ASL) data

    PennLINC/aslprep's past year of commit activity
    Python 64 22 41 (2 issues need help) 7 Updated Oct 16, 2026
  • TRXScan Public

    Simulate realistic dMRI with streamlines and psegs

    PennLINC/TRXScan's past year of commit activity
    Python 1 Apache-2.0 1 9 0 Updated Oct 16, 2026
  • qsirecon Public

    Reconstruction of preprocessed q-space images (dMRI)

    PennLINC/qsirecon's past year of commit activity
    Python 25 BSD-3-Clause 17 79 5 Updated Oct 16, 2026
  • qsiprep Public

    Preprocessing of diffusion MRI

    PennLINC/qsiprep's past year of commit activity
    Python 194 BSD-3-Clause 63 71 9 Updated Oct 16, 2026
  • ModelArrayIO Public

    Companion converter software for ModelArray for converting data back and forth from the HDF5 file format.

    PennLINC/ModelArrayIO's past year of commit activity
    Python 0 BSD-3-Clause 0 12 11 Updated Oct 16, 2026
  • aslscan Public

    ASL simulator

    PennLINC/aslscan's past year of commit activity
    Rust 0 0 4 1 Updated Oct 16, 2026
  • xcp_d Public

    Post-processing of fMRIPrep, NiBabies, and HCP outputs

    PennLINC/xcp_d's past year of commit activity
    Python 119 BSD-3-Clause 40 42 12 Updated Oct 16, 2026
  • sypres-docs Public

    Analysis and documentation repo for SYPRES.

    PennLINC/sypres-docs's past year of commit activity
    JavaScript 3 MIT 0 2 6 Updated Oct 16, 2026
  • dipy Public Forked from dipy/dipy

    DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

    PennLINC/dipy's past year of commit activity
    Python 0 524 0 0 Updated Oct 14, 2026
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