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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

长期招聘博士后,欢迎咨询。


The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler, GOSemSim, DOSE), phylogenetic data integration and visualization (e.g., treeio, ggtree, ggtreeExtra), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak, aplot, enrichplot, ChIPseeker), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    R 1.2k 268

  2. ggtree ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 935 183

  3. aisdk aisdk Public

    🤖 A production-grade framework for building AI-powered applications in R.

    R 76 8

  4. Rho Rho Public

    an agent-native desktop workbench for R

    33 10

  5. SVP SVP Public

    Spatially Variable Profiler

    R 12

  6. sclet sclet Public

    A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

    R 24 8

Repositories

Showing 10 of 143 repositories
  • sclet Public

    A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

    YuLab-SMU/sclet's past year of commit activity
    R 24 8 0 0 Updated Oct 15, 2026
  • ggimage Public

    🎨 Use Images in ggplot2

    YuLab-SMU/ggimage's past year of commit activity
    R 179 36 0 0 Updated Oct 15, 2026
  • enrichit Public

    C++ Implementations of Functional Enrichment Analysis

    YuLab-SMU/enrichit's past year of commit activity
    R 4 5 0 0 Updated Oct 15, 2026
  • yulab-smu.github.io Public

    🏠 Homepage for YuLab-SMU

    YuLab-SMU/yulab-smu.github.io's past year of commit activity
    HTML 14 6 0 0 Updated Oct 15, 2026
  • ygc-blog Public

    Guangchuang Yu's Blog

    YuLab-SMU/ygc-blog's past year of commit activity
    TypeScript 0 MIT 0 0 0 Updated Oct 14, 2026
  • Rho Public

    an agent-native desktop workbench for R

    YuLab-SMU/Rho's past year of commit activity
    33 AGPL-3.0 10 15 2 Updated Oct 14, 2026
  • Rho-plugins Public

    Official scientific plugins and native runtime implementations for Rho

    YuLab-SMU/Rho-plugins's past year of commit activity
    Python 0 AGPL-3.0 0 0 0 Updated Oct 14, 2026
  • Rho-core Public

    Generic Rho Host, operation journal, public protocol and SDK

    YuLab-SMU/Rho-core's past year of commit activity
    Rust 0 AGPL-3.0 0 0 0 Updated Oct 14, 2026
  • geneSetEmbedding Public

    Gene Set to Embedding Utilities

    YuLab-SMU/geneSetEmbedding's past year of commit activity
    R 7 2 0 0 Updated Oct 13, 2026
  • tidydr Public

    Unify Dimensionality Reduction Results

    YuLab-SMU/tidydr's past year of commit activity
    R 15 7 0 0 Updated Oct 13, 2026