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@plantinformatics

Plant Informatics (Agriculture Victoria)

Genomics Data team at Agriculture Victoria

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  1. pretzel pretzel Public

    Javascript full-stack framework for Big Data visualisation and analysis

    JavaScript 47 13

  2. shortbread2 shortbread2 Public

    Shortbread2 is a bioinformatics pipeline for identifying single nucleotide polymorphisms (SNPs) and insertions/deletions (indels) from High-Throughput Next Generation Sequencing (NGS) data.

    Perl 1 1

  3. bakery-research bakery-research Public

    Breeder-AI-Tool: A plant biology GraphRAG pipeline built with Neo4j, Google Gemini, LangChain, vector search, full-text search, graph traversal, and Bakery-Genebank accession lookup

    Python 1 1

  4. pretzel-data pretzel-data Public

    Data structure for https://github.com/plantinformatics/pretzel

    2

  5. pretzel-application-note pretzel-application-note Public

    A repository for an application note about pretzel

    TeX

  6. pretzel-input-generator pretzel-input-generator Public

    Nextflow

Repositories

Showing 10 of 29 repositories
  • pretzel Public

    Javascript full-stack framework for Big Data visualisation and analysis

    plantinformatics/pretzel's past year of commit activity
    JavaScript 47 GPL-3.0 13 166 8 Updated Oct 15, 2026
  • genolink Public

    Genolink is a middleware for integrating genotype databases and Genesys, reducing data redundancy, and enabling real-time data access and filtering across genomic platforms.

    plantinformatics/genolink's past year of commit activity
    JavaScript 0 GPL-3.0 2 1 0 Updated Oct 15, 2026
  • fairybread Public
    plantinformatics/fairybread's past year of commit activity
    TypeScript 0 GPL-3.0 0 4 0 Updated Oct 13, 2026
  • brioche Public

    Brioche is a bioinformatics pipeline for mapping markers to a given reference genome. brioche uses Nextflow, a domain-specific language (DSL) for defining workflows, as its workflow management tool. Brioche streamlines marker mapping to reference genomes through a Nextflow-powered pipeline.

    plantinformatics/brioche's past year of commit activity
    R 0 0 0 0 Updated Oct 13, 2026
  • shortbread2 Public

    Shortbread2 is a bioinformatics pipeline for identifying single nucleotide polymorphisms (SNPs) and insertions/deletions (indels) from High-Throughput Next Generation Sequencing (NGS) data.

    plantinformatics/shortbread2's past year of commit activity
    Perl 1 1 0 0 Updated Oct 9, 2026
  • bakery-research Public

    Breeder-AI-Tool: A plant biology GraphRAG pipeline built with Neo4j, Google Gemini, LangChain, vector search, full-text search, graph traversal, and Bakery-Genebank accession lookup

    plantinformatics/bakery-research's past year of commit activity
    Python 1 GPL-3.0 1 0 0 Updated Oct 8, 2026
  • pretzel-static-pages Public

    Static HTML Content for the landing page of the Pretzel project instance

    plantinformatics/pretzel-static-pages's past year of commit activity
    HTML 0 0 0 0 Updated Oct 7, 2026
  • plantinformatics/pretzel-documentation-website's past year of commit activity
    Shell 0 2 4 2 Updated Oct 2, 2026
  • plantinformatics/strategic-partnership-website's past year of commit activity
    0 0 0 0 Updated Oct 1, 2026
  • vcf-genotype-brapi Public

    Client and server functions to access genotype data from VCF via a custom web API and BrAPI

    plantinformatics/vcf-genotype-brapi's past year of commit activity
    JavaScript 0 0 0 0 Updated Jul 31, 2026

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